Noor Sohail – Publications

	Introduction to single-cell RNA-seq Hands-on workshop covering experimental design, QC, clustering, and cell type annotation using Seurat in R/RStudio, starting from count matrices.
	Introduction to Spatial Transcriptomics Hands-on introduction to spatial transcriptomics data analysis of Visium HD experiments.
	Pseudobulk and Related Approaches for scRNA-seq Analysis Workshop on pseudobulk methods (from single-cell RNA-seq data) for experimental designs with biological replicates. Therefore sample variation can be accounted for with DESeq2 and proportional analyses.
	Introduction to Python Practical workshop from zero Python experience to working with real-world data. Includes topics such as: data structures, data manipulation with pandas, and visualization with Matplotlib and Seaborn.

	Co-expression Workflow for scRNA Calculate co-expression scores for zero-inflated single-cell datasets.
	Template for QC of scRNA Jupyter notebook template to run initial QC on scRNA datasets using scanpy.

Tidy Tuesday

Weekly data visualization practice using R and ggplot2.