Publications

My name is shown in bold. For a complete, up-to-date list, see my Google Scholar profile.

• bioRxiv
  Aging-related transcriptomic changes with spatial resolution in the human prefrontal cortex Preprint

  Rai A, Iatrou A, Valenzuela Arzeta I, …, Ho Sui S, Daskalakis NP, Mavrikaki M

  bioRxiv (2026)

  NeuroscienceTranslational genomics
• JCI Insight
  In morphea, cytotoxic resident memory T cells induce chronic, immunogenic endothelial cell injury via necroptosis

  Crisler WJ, Sohail N, Steuart SJ, Vazquez-Machado M, Mahajan A, …, Clark RA, LaChance A

  JCI Insight (2026)

  Immune biologyTranslational genomics
• 
  CD8+ T cell recall cytotoxicity during antiretroviral therapy is associated with limited HIV-1 reservoir size and activity Preprint

  Collins DR, Olatotse MJ, Urbach JM, …, Jordan HC, Sohail N, Clayton KL, …, Walker BD, Tsibris A

  medRxiv (2025)

  Immune biologyTranslational genomics
• 
  Sensory input, sex and function shape hypothalamic cell type development

  Kaplan HS, Logeman BL, Zhang K, Yawitz TA, Santiago C, Sohail N, …, Dulac C

  Nature (2025)

  Neuroscience
• 
  SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data

  Persad S, Choo ZN, Dien C, Sohail N, …, Pe'er D

  Nature Biotechnology (2023)

  Methods
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  MACHETE identifies interferon-encompassing chromosome 9p21.3 deletions as mediators of immune evasion and metastasis

  Barriga FM, Tsanov KM, Ho YJ, Sohail N, …, Lowe SW

  Nature Cancer (2022)

  Immune biologyCancer
• 
  Overcoming challenging substituent perturbations with multisite λ-dynamics: a case study targeting β-secretase 1

  Vilseck JZ, Sohail N, …, Brooks CL III

  Journal of Physical Chemistry Letters (2019)

  Molecular dynamics
• 
  Landscape of germline and somatic mitochondrial DNA mutations in pediatric malignancies

  Triska P, Kaneva K, Merkurjev D, Sohail N, …, Gai X

  Cancer Research (2019)

  CancerMitochondrial genetics

Selected Presentations

• Sohail N, Billingsley JM, Geist F, Hoong H, Ho Sui S. “Co-expression workflow for single-cell RNA sequencing data.” Poster, ISMB, 2024.
• Sohail N, Moorman A, Pe'er D. “SEACells: using single-cell aggregation to facilitate data integration.” Talk, Chan Zuckerberg Initiative Assembling Tissue References Workshop, 2022.
• Sohail N, Triche TJ. “MTseeker: mitochondrial variant analysis tools for Bioconductor.” Poster, Bioconductor Conference, 2018.